rna-seq pipeline of partek flow software Search Results


nf-core/rnaseq v3.14.0 pipeline  (ReCor Medical Inc)
90
ReCor Medical Inc nf-core/rnaseq v3.14.0 pipeline
Nf Core/Rnaseq V3.14.0 Pipeline, supplied by ReCor Medical Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pm40080216-59-8-14?v=ReCor+Medical+Inc
Average 90 stars, based on 1 article reviews
nf-core/rnaseq v3.14.0 pipeline - by Bioz Stars, 2026-07
90/100 stars
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rna-seq pipeline  (Applied Bioinformatics)
90
Applied Bioinformatics rna-seq pipeline
Rna Seq Pipeline, supplied by Applied Bioinformatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pmc08493594-312-14-9?v=Applied+Bioinformatics
Average 90 stars, based on 1 article reviews
rna-seq pipeline - by Bioz Stars, 2026-07
90/100 stars
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rnaseq pipelines  (OmicSoft Corporation)
90
OmicSoft Corporation rnaseq pipelines
Rnaseq Pipelines, supplied by OmicSoft Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/us09815898-2183-15-14?v=OmicSoft+Corporation
Average 90 stars, based on 1 article reviews
rnaseq pipelines - by Bioz Stars, 2026-07
90/100 stars
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rna-seq pipeline  (Sequentia Biotech)
90
Sequentia Biotech rna-seq pipeline
Rna Seq Pipeline, supplied by Sequentia Biotech, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pmc08024496-84-7-11?v=Sequentia+Biotech
Average 90 stars, based on 1 article reviews
rna-seq pipeline - by Bioz Stars, 2026-07
90/100 stars
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rna-seq/chip-seq data  (Epigenomics ag)
90
Epigenomics ag rna-seq/chip-seq data
Rna Seq/Chip Seq Data, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pmc05458484-253-9-13?v=Epigenomics+ag
Average 90 stars, based on 1 article reviews
rna-seq/chip-seq data - by Bioz Stars, 2026-07
90/100 stars
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bcbionextgen single cell rna-seq analysis pipeline  (NextGen Sciences)
90
NextGen Sciences bcbionextgen single cell rna-seq analysis pipeline
Bcbionextgen Single Cell Rna Seq Analysis Pipeline, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/10__7554_slash_elife__72879-642-21-28?v=NextGen+Sciences
Average 90 stars, based on 1 article reviews
bcbionextgen single cell rna-seq analysis pipeline - by Bioz Stars, 2026-07
90/100 stars
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quantseq 30 mrna-seq integrated data analysis pipeline  (Bluebee Inc)
90
Bluebee Inc quantseq 30 mrna-seq integrated data analysis pipeline
Quantseq 30 Mrna Seq Integrated Data Analysis Pipeline, supplied by Bluebee Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pm33617890-71-9-18?v=Bluebee+Inc
Average 90 stars, based on 1 article reviews
quantseq 30 mrna-seq integrated data analysis pipeline - by Bioz Stars, 2026-07
90/100 stars
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standard rna seq pipeline  (Novogene)
86
Novogene standard rna seq pipeline
Standard Rna Seq Pipeline, supplied by Novogene, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pm42298604-110-5-4?v=Novogene
Average 86 stars, based on 1 article reviews
standard rna seq pipeline - by Bioz Stars, 2026-07
86/100 stars
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sci rna seq3  (Brickell Biotech)
86
Brickell Biotech sci rna seq3
Sci Rna Seq3, supplied by Brickell Biotech, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pm41419928-94-17-14?v=Brickell+Biotech
Average 86 stars, based on 1 article reviews
sci rna seq3 - by Bioz Stars, 2026-07
86/100 stars
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space ranger  (10X Genomics)
86
10X Genomics space ranger
Space Ranger, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pmc10372921-94-3-6?v=10X+Genomics
Average 86 stars, based on 1 article reviews
space ranger - by Bioz Stars, 2026-07
86/100 stars
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prism 10 software  (GraphPad Software Inc)
90
GraphPad Software Inc prism 10 software
Prism 10 Software, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pmc11723947__41467_2025_55848_MOESM7_ESM-11-1-5?v=GraphPad+Software+Inc
Average 90 stars, based on 1 article reviews
prism 10 software - by Bioz Stars, 2026-07
90/100 stars
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rna-seq pipeline  (NextGen Sciences)
90
NextGen Sciences rna-seq pipeline
Gene expression profile of Sox15 -knockout ESCs . A , <t>RNA-seq</t> analysis identifies differentially expressed genes (DEGs) in Sox15 KO1 ESCs compared to WT, plotted as a function of mean expression (fpkm) and fold changes (log2). Number of genes upregulated (830) and downregulated (589) are indicated. B , gene ontology (GO) analysis on DEGs in Sox15 KO1 ESCs compared with all annotated genes. p -value per GO classification is shown (-log10( p -value)). C , heatmap showing the relative expression levels of indicated genes from three biological replicates each of WT and Sox15 KO ESCs. Scaled values indicate relative downregulation ( red ) or upregulation ( green ) of gene expression. Genes from each category are manually curated. ESC, embryonic stem cell.
Rna Seq Pipeline, supplied by NextGen Sciences, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+pipeline+of+partek+flow+software/pmc10023989-325-6-13?v=NextGen+Sciences
Average 90 stars, based on 1 article reviews
rna-seq pipeline - by Bioz Stars, 2026-07
90/100 stars
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Image Search Results


Gene expression profile of Sox15 -knockout ESCs . A , RNA-seq analysis identifies differentially expressed genes (DEGs) in Sox15 KO1 ESCs compared to WT, plotted as a function of mean expression (fpkm) and fold changes (log2). Number of genes upregulated (830) and downregulated (589) are indicated. B , gene ontology (GO) analysis on DEGs in Sox15 KO1 ESCs compared with all annotated genes. p -value per GO classification is shown (-log10( p -value)). C , heatmap showing the relative expression levels of indicated genes from three biological replicates each of WT and Sox15 KO ESCs. Scaled values indicate relative downregulation ( red ) or upregulation ( green ) of gene expression. Genes from each category are manually curated. ESC, embryonic stem cell.

Journal: The Journal of Biological Chemistry

Article Title: Transcription factor SOX15 regulates stem cell pluripotency and promotes neural fate during differentiation by activating the neurogenic gene Hes5

doi: 10.1016/j.jbc.2023.102996

Figure Lengend Snippet: Gene expression profile of Sox15 -knockout ESCs . A , RNA-seq analysis identifies differentially expressed genes (DEGs) in Sox15 KO1 ESCs compared to WT, plotted as a function of mean expression (fpkm) and fold changes (log2). Number of genes upregulated (830) and downregulated (589) are indicated. B , gene ontology (GO) analysis on DEGs in Sox15 KO1 ESCs compared with all annotated genes. p -value per GO classification is shown (-log10( p -value)). C , heatmap showing the relative expression levels of indicated genes from three biological replicates each of WT and Sox15 KO ESCs. Scaled values indicate relative downregulation ( red ) or upregulation ( green ) of gene expression. Genes from each category are manually curated. ESC, embryonic stem cell.

Article Snippet: RNA-seq samples were processed using the RNA-seq pipeline implemented in bcbio-nextgen v1.1.3 ( https://bcbio-nextgen.readthedocs.org ).

Techniques: Expressing, Knock-Out, RNA Sequencing Assay